Custom post type pages that break:
http://cprgi.org/publications/
http://cprgi.org/cprgi-research/ongoing/ (actually a custom taxonomy archive loop)
blog page that breaks:
http://cprgi.org/blog/
I think I had created Views as well as View Templates for the content that displays on those pages a while back, but when I had trouble with the plugin I was in a rush to get this up and I just figured out displaying it otherwise. I have installed a clean version of Views. The one custom post type that I never used Views for at all doesn't break when I activate the Views Plugin:
http://cprgi.org/announcements/