I am having a similar problem. The I added a views shortcode on
http://languageportability.com/our-partners/
The header results in the logo shrinking, the menu bar moving up next to the logo, and the breadcrumbs to move up into the dark header area. See the difference:
http://languageportability.com/partnership-opportunities.
Ready to go live once this is fixed.
Thanks!
Cindy